.................................. Super 9 air cooled uses the AC-CDI correct?..............
I do not know whether your scooter has an AC or DC CDI, but I did some intensive reading about CDI's some time ago and to my understanding about from what I read I think it will make sense to find out what CDI your scooter has - AC, or DC.
If your scooter has a DC CDI, you need to understand two things:
1. The energy (Voltage) to create a spark at the spark plug comes directly from the battery.
2. The DC CDI's have capacitors - and if the capacitors do not get sufficient energy (Voltage) from the battery, the capacitors will not release sufficient energy to the ignition Coil and spark plug to generate a proper spark at the plug.
In other words - the weaker the voltage from the battery, the weaker spark you'll get at the spark plug.
Therefore I think it will make sense just to find out first what CDI your scooter has.
In case of an DC CDI:
1. Make sure that "new" battery is not faulty . (Make sure it's fully charged, and take it to a battery specialist to do a proper load test.
2. Make sure the battery terminals are not corroded, and all terminals are connected properly.
In case nobody can tell whether the CDI on your scooter is AC or DC, just take a picture of the terminals on the CDI. Also take measurements on the CDI, and forward the details.
Just another question - are you sure the valve clearance gaps on your scooter are not too small ? (The recommended gap clearances are very small, and one can easily make a mistake during valve clearance adjustments).