air filter 1st buddy! get the stock! the airbox/filter actually is a little tricky! its made to give enough flow of air to make the engine run clean and slightly lean on low end and restricts the air flow on high end to make the mixture richer for more power and keep the bike from over heating, there is also the idle close valve that gives a extra flow of fuel when you are closing the throttle on engine breaking!
the jetting about the 110 and 108, follow the manual! its because of the water circulating rear 1st then front so front is fitted with 110. reversing the jets will definitely make one cylinder run richer and the other leaner, if both colors are the same then you are good, if they are slightly off then use the idle mixture screw to compensate.