Valves and intake can be too large, and they can be too small.
If they're too small, you rob the engine of power by starving it for air.
If they're too big, you also rob the engine of power, because you no longer have high airflow speed and that momentum that packs more air into the cylinder just before the intake valve closes. And you open the intake to air reversion on valve overlap if your valve timing isn't right, or your exhaust isn't properly designed (most 4-stroke scooter exhausts aren't) to bounce negative pressure pulses back toward the exhaust valve just before it closes.
There's some very complex math to do if you want to determine the exact right valve size and intake volume... taking into account air temperature and density, engine displacement, valve timing, intake air speed, intake volume and length, and intake resonance.
Get it wrong, and your engine will still run, but it'll be a dog. Get it right, and you can increase engine power by 10-20% pretty easily.
http://mototuneusa.com/homework.htmNow, you may be asking, "If I 'port / tune' the intake and valve size so it's most efficient at high engine RPM, won't it be a dog at lower RPMs because that ram air effect is gone?"
Not necessarily... you can cut what are essentially screw threads into the intake. At lower engine RPMs (and hence, lower intake air flow) they create a laminar boundary that has the effect of squeezing down the size of the intake, keeping intake air flow speed high and thus still giving a ram air effect. At high engine RPMs, that laminar flow boundary gets squeezed further and further out toward the intake walls, creating the effect of a larger intake, while still maintaining high airflow speed.
The screw threads (Powre Lynz is what Mike Holler calls them) cut into the intake walls also help if you've got a carbureted engine in that they ensure any fuel dropping out of the airstream get broken up, bounced around and evaporated.
http://www.allpar.com/fix/holler/head-porting2.htmlIn short, try the following combinations:
stock valves, stock intake
stock valves, high velocity intake
big valves, stock intake
big valves, high velocity intake
I'm betting you'll find that the stock valves, high velocity intake combination will give you the most power and engine tractability.