Look on Josh's sight, Scooter Invasion, and look for "port maps".
There are a ton of them all well defined, and you can choose anything that sounds like what you want.
As a shotgun approach on the OEM jug you can taper, and raise the intake ports by 5mm. Same for the boost port.
This will give you a higher power-band by about 1krpm, more intake charge per stroke, and about 5mph more top end.
From there you can maintain the height, and increase the width. The goal is getting more fuel in. You will need to open the pipe at some point but you can go pretty far w/ the porting before a performance pipe is a must have.
Even getting the angles cleaned up, and flowing faster is a bonus. I use one of those fluted steel cutting wheels on a dermel. It cuts better, and lasts longer than the cheap grinding wheels you get for dremels. about four of those cutting wheels will complete a through port job.