As mentioned by red, could be a misfiring plug. Also water in the fuel?? Water can get in the fuel filter, new or old, and form a dam that the fuel cannot pass thru easlily. After engine is shut off, the water drains back enough for the fuel to get thru, until enough vibration causes the water, which is much thicker than gas, to form another blockage. This may not seem logical but I've seen it happen more than once. There is a product, I think it's called HEAT, that will break the water down and cause it to go on thru the filter. Also, Karl's thoughts on fuel tank ventilation could be a factor. All an engine needs to run is fuel, air, and spark at the proper timing, so your problem lies some where in that. Not much help, I know. I wish you luck.The Helix 250 is a fine scooter.Let us know what the verdict is.
Mac