What could possibly go wrong? 
famous last words... I got everything cleaned and replaced and buttoned it back up. Started the car and it idled quite high and then ran like crap. Idle went up and down, down to a few hundred rpm and car died a few times. It smelled funny, too. I thought maybe the computer was relearning the idle with a clean throttle body and no intake air leak. I shut the car down and was going to walk away for a while to think about it....I was just opening the door into my kitchen when it hit me....OH, SH*T! SH*T, SH*T, SH*T! What did I forget to do?.....remove the paper towels that were stuffed into each intake port to keep dirt and crud out of the motor.
I removed the intake system in about 1 minute flat...pulled the intake back and couldn't see the paper towels. Oh, sh*t, did they get sucked into the motor? Bending valves? Nope, they were just sucked in bit further. I pulled them out with some long needle nose pliers. They were dirty and smelled like gas but were otherwise in the same shape as I'd put them in. Nothing got into the valves or motor.
I went from thinking I'd just grenaded the motor to a feeling of total relief. Started it back up and it ran fine..high idle, but that is normal with a Toyota after a throttle body clean until it relearns the correct idle. Disaster averted.